PH01000056G0270's details annotation
1.Annotation
ICBR annotation: PWWP domain containing protein, expressed
Blast result AT3G63070 : 3.60E-38
Blast annotation: Tudor/PWWP/MBT domain-containing protein
2.Location
Scaffold: PH01000056
Strand: +
| Region | Start | End |
| gene | 230140 | 248169 |
| mRNA | 230140 | 248169 |
| exon | 230140 | 232155 |
| exon | 233880 | 234097 |
| exon | 235189 | 235265 |
| exon | 237271 | 239265 |
| exon | 240828 | 241296 |
| exon | 242259 | 242440 |
| exon | 243510 | 243969 |
| exon | 244121 | 244705 |
| exon | 244902 | 245072 |
| exon | 245247 | 245350 |
| exon | 247590 | 247689 |
| exon | 247869 | 248169 |
| CDS | 231483 | 232155 |
| CDS | 233880 | 234097 |
| CDS | 235189 | 235265 |
| CDS | 237271 | 239265 |
| CDS | 240828 | 241296 |
| CDS | 242259 | 242440 |
| CDS | 243510 | 243969 |
| CDS | 244121 | 244705 |
| CDS | 244902 | 245072 |
| CDS | 245247 | 245350 |
| CDS | 247590 | 247689 |
| CDS | 247869 | 247892 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.