PH01000056G0380's details annotation
1.Annotation
ICBR annotation: choline transporter-related, putative, expressed
Blast result AT5G13760 : 5.00E-133
Blast annotation: Plasma-membrane choline transporter family protein
2.Location
Scaffold: PH01000056
Strand: -
| Region | Start | End |
| gene | 302440 | 308952 |
| mRNA | 302440 | 308952 |
| exon | 302440 | 303862 |
| exon | 303957 | 304193 |
| exon | 304295 | 304747 |
| exon | 304813 | 305184 |
| exon | 306308 | 306535 |
| exon | 307838 | 307945 |
| exon | 307987 | 308069 |
| exon | 308392 | 308952 |
| CDS | 303683 | 303862 |
| CDS | 303957 | 304193 |
| CDS | 304295 | 304747 |
| CDS | 304813 | 305184 |
| CDS | 306308 | 306535 |
| CDS | 307838 | 307945 |
| CDS | 307987 | 308069 |
| CDS | 308392 | 308458 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04515.11 | Choline_transpo | 260 | 539 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.