PH01000056G1500's details annotation
1.Annotation
ICBR annotation: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, putative, expressed
Blast result AT3G57220 : 5.00E-119
Blast annotation: Glycosyl transferase family 4 protein
2.Location
Scaffold: PH01000056
Strand: -
| Region | Start | End |
| gene | 1064774 | 1069544 |
| mRNA | 1064774 | 1069544 |
| exon | 1064774 | 1065000 |
| exon | 1065098 | 1065138 |
| exon | 1065251 | 1065311 |
| exon | 1065936 | 1066022 |
| exon | 1066115 | 1066242 |
| exon | 1066459 | 1066574 |
| exon | 1066840 | 1066910 |
| exon | 1067703 | 1067794 |
| exon | 1068088 | 1068175 |
| exon | 1069154 | 1069544 |
| CDS | 1064823 | 1065000 |
| CDS | 1065098 | 1065138 |
| CDS | 1065251 | 1065311 |
| CDS | 1065936 | 1066022 |
| CDS | 1066115 | 1066242 |
| CDS | 1066459 | 1066574 |
| CDS | 1066840 | 1066910 |
| CDS | 1067703 | 1067794 |
| CDS | 1068088 | 1068175 |
| CDS | 1069154 | 1069371 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00953.20 | Glycos_transf_4 | 110 | 264 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| N-Glycan biosynthesis | UDP-N-acetylglucosamine--dolichyl-phosphateN-acetylglucosaminephosphotransferase[EC:2.7.8.15] | ko00510 | K01001 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008963 | phospho-N-acetylmuramoyl-pentapeptide-transferase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.