PH01000056G1510's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT4G30890 : 7.00E-126
Blast annotation: ubiquitin-specific protease 24
2.Location
Scaffold: PH01000056
Strand: +
| Region | Start | End |
| gene | 1070137 | 1076491 |
| mRNA | 1070137 | 1076491 |
| exon | 1070137 | 1070508 |
| exon | 1070989 | 1071693 |
| exon | 1071774 | 1071961 |
| exon | 1073371 | 1073612 |
| exon | 1074250 | 1074392 |
| exon | 1074846 | 1075022 |
| exon | 1075338 | 1076491 |
| CDS | 1070491 | 1070508 |
| CDS | 1070989 | 1071693 |
| CDS | 1071774 | 1071961 |
| CDS | 1073371 | 1073612 |
| CDS | 1074250 | 1074392 |
| CDS | 1074846 | 1075022 |
| CDS | 1075338 | 1075526 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 | |
| coexpression network | CFinderM001705 | Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation histone_lysine_methylation chloroplast, histone-lysine N-methyltransferase activity, histone_binding ubiquitin-dependent protein catabolic process, |
| coexpression network | CFinderM001742 | GT31 GlycosylTransferases Basal_transcription_factors fatty-acyl-CoA binding, TBP-class_protein_binding ubiquitin-dependent protein catabolic process, protein glycosylation, galactosyltransferase activity, ubiquitin thiolesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 204 | 550 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.