Annotation of co-expression genes

PH01000057G0060's details annotation

1.Annotation

ICBR annotation: OsSPL8 - SBP-box gene family member, expressed

Blast result AT1G02065 : 1.80E-36
Blast annotation: squamosa promoter binding protein-like 8

2.Location

Scaffold: PH01000057
Strand: +

RegionStartEnd
gene4761353685
mRNA4761353685
exon4761350906
exon5270752861
exon5298353685
CDS5039550906
CDS5270752861
CDS5298353359

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000808RLK-Pelle_LRR-Xa (from iTAK)
peroxisomal membrane,
membrane,
SBP Transcription_Regulator(from PlantTFDB)
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
ATPase activity,
transcription_corepressor_activity
nucleoside-triphosphatase activity,
coexpression networkCFinderM001394membrane,
RLK-Pelle_LRR-Xa (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
ATPase activity,
nucleoside-triphosphatase activity,
3'-5' exonuclease activity,
nucleobase-containing compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SBP
Transcription_Regulator(from PlantTFDB)SBP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03110.13SBP124198

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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