PH01000057G0190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G24530 : 2.50E-62
Blast annotation: -
2.Location
Scaffold: PH01000057
Strand: +
| Region | Start | End |
| gene | 145651 | 148158 |
| mRNA | 145651 | 148158 |
| exon | 145651 | 148158 |
| CDS | 146681 | 147964 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
| coexpression network | CFinderM000489 | SAGA-type_complex cell death, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12767.6 | SAGA-Tad1 | 32 | 337 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0070461 | SAGA-type complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.