PH01000057G1110's details annotation
1.Annotation
ICBR annotation: RCC2, putative, expressed
Blast result AT1G19880 : 0.00E+00
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01000057
Strand: +
| Region | Start | End |
| gene | 767051 | 774146 |
| mRNA | 767051 | 774146 |
| exon | 767051 | 768332 |
| exon | 769938 | 769999 |
| exon | 770064 | 770131 |
| exon | 770312 | 770418 |
| exon | 770869 | 770974 |
| exon | 771107 | 771158 |
| exon | 771239 | 771356 |
| exon | 771457 | 771487 |
| exon | 771651 | 771674 |
| exon | 771756 | 771880 |
| exon | 773081 | 773162 |
| exon | 773326 | 773448 |
| exon | 773558 | 773611 |
| exon | 773696 | 773765 |
| exon | 773962 | 774146 |
| CDS | 768095 | 768332 |
| CDS | 769938 | 769999 |
| CDS | 770064 | 770131 |
| CDS | 770312 | 770418 |
| CDS | 770869 | 770974 |
| CDS | 771107 | 771158 |
| CDS | 771239 | 771356 |
| CDS | 771457 | 771487 |
| CDS | 771651 | 771674 |
| CDS | 771756 | 771880 |
| CDS | 773081 | 773162 |
| CDS | 773326 | 773448 |
| CDS | 773558 | 773611 |
| CDS | 773696 | 773765 |
| CDS | 773962 | 774018 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 90 | 139 |
| PF00415.17 | RCC1 | 146 | 188 |
| PF00415.17 | RCC1 | 199 | 258 |
| PF00415.17 | RCC1 | 261 | 312 |
| PF00415.17 | RCC1 | 366 | 412 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.