PH01000057G1570's details annotation
1.Annotation
ICBR annotation: exosome complex exonuclease, putative, expressed
Blast result AT3G61620 : 4.50E-70
Blast annotation: 3-5-exoribonuclease family protein
2.Location
Scaffold: PH01000057
Strand: -
| Region | Start | End |
| gene | 1077441 | 1087112 |
| mRNA | 1077441 | 1087112 |
| exon | 1077441 | 1079080 |
| exon | 1079174 | 1079213 |
| exon | 1079705 | 1079790 |
| exon | 1079881 | 1079997 |
| exon | 1081030 | 1081066 |
| exon | 1081158 | 1081236 |
| exon | 1081893 | 1081960 |
| exon | 1082033 | 1082074 |
| exon | 1082551 | 1082611 |
| exon | 1083287 | 1083431 |
| exon | 1083474 | 1087112 |
| CDS | 1078908 | 1079080 |
| CDS | 1079174 | 1079213 |
| CDS | 1079705 | 1079790 |
| CDS | 1079881 | 1079997 |
| CDS | 1081030 | 1081066 |
| CDS | 1081158 | 1081236 |
| CDS | 1081893 | 1081960 |
| CDS | 1082033 | 1082074 |
| CDS | 1082551 | 1082611 |
| CDS | 1083287 | 1083431 |
| CDS | 1083474 | 1083618 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01138.20 | RNase_PH | 98 | 212 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | exosome complex component RRP41 | ko03018 | K11600 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.