PH01000057G1660's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G42130 : 1.10E-86
Blast annotation: Plastid-lipid associated protein PAP / fibrillin family protein
2.Location
Scaffold: PH01000057
Strand: +
| Region | Start | End |
| gene | 1151755 | 1156035 |
| mRNA | 1151755 | 1156035 |
| exon | 1151755 | 1152186 |
| exon | 1152610 | 1152731 |
| exon | 1153153 | 1153236 |
| exon | 1153448 | 1153544 |
| exon | 1153915 | 1154014 |
| exon | 1154451 | 1154516 |
| exon | 1154779 | 1154831 |
| exon | 1155750 | 1156035 |
| CDS | 1151971 | 1152186 |
| CDS | 1152610 | 1152731 |
| CDS | 1153153 | 1153236 |
| CDS | 1153448 | 1153544 |
| CDS | 1153915 | 1154014 |
| CDS | 1154451 | 1154516 |
| CDS | 1154779 | 1154831 |
| CDS | 1155750 | 1155860 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001223 | chloroplast, C2C2-GATA Transcription_Regulator(from iTAK) GATA Transcription_Regulator(from PlantTFDB) Oxidative_phosphorylation |
| coexpression network | CFinderM001406 | chloroplast, RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04755.11 | PAP_fibrillin | 88 | 275 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0009507 | chloroplast |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.