PH01000058G0460's details annotation
1.Annotation
ICBR annotation: amidohydrolase, putative, expressed
Blast result AT3G55850 : 1.20E-95
Blast annotation: Amidohydrolase family
2.Location
Scaffold: PH01000058
Strand: +
| Region | Start | End |
| gene | 277281 | 284163 |
| mRNA | 277281 | 284163 |
| exon | 277281 | 277427 |
| exon | 277517 | 277656 |
| exon | 277813 | 277914 |
| exon | 278054 | 278126 |
| exon | 278625 | 278731 |
| exon | 278813 | 278936 |
| exon | 281777 | 281971 |
| exon | 282735 | 282760 |
| exon | 283511 | 283606 |
| exon | 283682 | 284163 |
| CDS | 277334 | 277427 |
| CDS | 277517 | 277656 |
| CDS | 277813 | 277914 |
| CDS | 278054 | 278126 |
| CDS | 278625 | 278731 |
| CDS | 278813 | 278936 |
| CDS | 281777 | 281971 |
| CDS | 282735 | 282760 |
| CDS | 283511 | 283606 |
| CDS | 283682 | 283834 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07969.10 | Amidohydro_3 | 88 | 354 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005737 | cytoplasm |
| GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
| GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
| GO:0019556 | histidine catabolic process to glutamate and formamide |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.