PH01000058G1000's details annotation
1.Annotation
ICBR annotation: LRP1, putative, expressed
Blast result AT5G12330 : 5.20E-21
Blast annotation: Lateral root primordium (LRP) protein-related
2.Location
Scaffold: PH01000058
Strand: -
| Region | Start | End |
| gene | 635996 | 637916 |
| mRNA | 635996 | 637916 |
| exon | 635996 | 636641 |
| exon | 636708 | 637916 |
| CDS | 636259 | 636641 |
| CDS | 636708 | 636726 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SRS |
| Transcription_Regulator(from PlantTFDB) | SRS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05142.11 | DUF702 | 11 | 62 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.