Gene details

Annotation of co-expression genes

PH01000059G0350's details annotation

1.Annotation

ICBR annotation: amine oxidase, putative, expressed

Blast result AT4G16310 : 0.00E+00
Blast annotation: LSD1-like 3

2.Location

Scaffold: PH01000059
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000068	cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex
coexpression network	CFinderM000912	intracellular, SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Ribosome translation, cellular protein modification process, structural constituent of ribosome, Ubiquitin_mediated_proteolysis
coexpression network	CFinderM001175	SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
coexpression network	CFinderM001520	SWI/SNF-SWI3 Transcription_Regulator(from iTAK) Glycine,_serine_and_threonine_metabolism L-serine biosynthetic process, RNA metabolic process, Methane_metabolism phosphoglycerate dehydrogenase activity, glycopeptide_alpha-N-acetylgalactosaminidase_activity

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
Transcription_Regulator(from iTAK)	SWI/SNF-SWI3

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003677	DNA binding
GO:0016491	oxidoreductase activity
GO:0055114	oxidation-reduction process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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