PH01000059G1030's details annotation
1.Annotation
ICBR annotation: homeobox domain containing protein, expressed
Blast result AT5G41410 : 3.20E-71
Blast annotation: POX (plant homeobox) family protein
2.Location
Scaffold: PH01000059
Strand: -
| Region | Start | End |
| gene | 589455 | 594839 |
| mRNA | 589455 | 594839 |
| exon | 589455 | 591452 |
| exon | 591827 | 591887 |
| exon | 592828 | 593207 |
| exon | 593350 | 593438 |
| exon | 593731 | 593797 |
| exon | 593906 | 594839 |
| CDS | 590826 | 591452 |
| CDS | 591827 | 591887 |
| CDS | 592828 | 593207 |
| CDS | 593350 | 593438 |
| CDS | 593731 | 593797 |
| CDS | 593906 | 594526 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000024 | HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) photosystem I, chlorophyll binding, DNA binding, Photosynthesis regulation of transcription, DNA-dependent, RLK-Pelle_LRR-Xa (from iTAK) sequence-specific DNA binding, Photosynthesis |
| coexpression network | CFinderM000025 | regulation of transcription, DNA-dependent, TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity, bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-BELL |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07526.10 | POX | 134 | 309 |
| PF05920.10 | Homeobox_KN | 378 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.