PH01000060G0090's details annotation
1.Annotation
ICBR annotation: thaumatin, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000060
Strand: -
| Region | Start | End |
| gene | 53303 | 59309 |
| mRNA | 53303 | 59309 |
| exon | 53303 | 54501 |
| exon | 54923 | 55008 |
| exon | 57061 | 57229 |
| exon | 58719 | 58899 |
| exon | 59004 | 59309 |
| CDS | 54072 | 54501 |
| CDS | 54923 | 55008 |
| CDS | 57061 | 57229 |
| CDS | 58719 | 58899 |
| CDS | 59004 | 59058 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000456 | DNA methylation, Peroxisome Fatty_acid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00314.16 | Thaumatin | 30 | 81 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.