PH01000060G0860's details annotation
1.Annotation
ICBR annotation: deoxyribodipyrimidine photolyase family protein, expressed
Blast result AT4G25290 : 7.00E-111
Blast annotation: DNA photolyases;DNA photolyases
2.Location
Scaffold: PH01000060
Strand: -
| Region | Start | End |
| gene | 604485 | 610677 |
| mRNA | 604485 | 610677 |
| exon | 604485 | 605025 |
| exon | 605845 | 606141 |
| exon | 606412 | 606433 |
| exon | 607021 | 607110 |
| exon | 607241 | 607478 |
| exon | 607707 | 608065 |
| exon | 608322 | 608474 |
| exon | 608578 | 608711 |
| exon | 608992 | 609021 |
| exon | 609482 | 610677 |
| CDS | 604943 | 605025 |
| CDS | 605845 | 606141 |
| CDS | 606412 | 606433 |
| CDS | 607021 | 607110 |
| CDS | 607241 | 607478 |
| CDS | 607707 | 608065 |
| CDS | 608322 | 608474 |
| CDS | 608578 | 608711 |
| CDS | 608992 | 609021 |
| CDS | 609482 | 609725 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00875.17 | DNA_photolyase | 43 | 166 |
| PF12697.6 | Abhydrolase_6 | 449 | 525 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.