PH01000060G1180's details annotation
1.Annotation
ICBR annotation: glycosyl transferase family 8, putative, expressed
Blast result AT3G61130 : 0.00E+00
Blast annotation: galacturonosyltransferase 1
2.Location
Scaffold: PH01000060
Strand: +
| Region | Start | End |
| gene | 787884 | 793688 |
| mRNA | 787884 | 793688 |
| exon | 787884 | 788239 |
| exon | 788350 | 788529 |
| exon | 789150 | 789218 |
| exon | 789305 | 789795 |
| exon | 790433 | 790458 |
| exon | 790959 | 791169 |
| exon | 791226 | 791299 |
| exon | 791408 | 791742 |
| exon | 791809 | 792166 |
| exon | 792250 | 792837 |
| exon | 792955 | 793688 |
| CDS | 788181 | 788239 |
| CDS | 788350 | 788529 |
| CDS | 789150 | 789218 |
| CDS | 789305 | 789795 |
| CDS | 790433 | 790458 |
| CDS | 790959 | 791169 |
| CDS | 791226 | 791299 |
| CDS | 791408 | 791742 |
| CDS | 791809 | 792166 |
| CDS | 792250 | 792837 |
| CDS | 792955 | 793230 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000582 | membrane, GT8 GlycosylTransferases |
| coexpression network | CFinderM001512 | leucyl-tRNA aminoacylation, GT8 GlycosylTransferases leucine-tRNA ligase activity, aminoacyl-tRNA_editing_activity tRNA aminoacylation for protein translation, Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism Aminoacyl-tRNA_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT8 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 546 | 861 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Starch and sucrose metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00500 | K13648 |
| Amino sugar and nucleotide sugar metabolism | alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] | ko00520 | K13648 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.