PH01000060G1880's details annotation
1.Annotation
ICBR annotation: mediator of RNA polymerase II transcription subunit 10, putative, expressed
Blast result AT1G26665 : 3.20E-40
Blast annotation: Mediator complex, subunit Med10
2.Location
Scaffold: PH01000060
Strand: -
| Region | Start | End |
| gene | 1275569 | 1279873 |
| mRNA | 1275569 | 1279873 |
| exon | 1275569 | 1276983 |
| exon | 1277839 | 1277941 |
| exon | 1278035 | 1278115 |
| exon | 1278224 | 1279873 |
| CDS | 1276486 | 1276983 |
| CDS | 1277839 | 1277941 |
| CDS | 1278035 | 1278115 |
| CDS | 1278224 | 1278444 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000224 | Others Transcription_Regulator(from iTAK) mediator complex, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, RNA_polymerase_II_transcription_cofactor_activity regulation of transcription from RNA polymerase II promoter, nitrogen compound metabolic process, Drug_metabolism_-_other_enzymes Steroid_hormone_biosynthesis Retinol_metabolism Drug_metabolism_-_cytochrome_P450 Porphyrin_and_chlorophyll_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 Pentose_and_glucuronate_interconversions Ascorbate_and_aldarate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09748.8 | Med10 | 45 | 135 |
| PF06273.10 | eIF-4B | 139 | 240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001104 | RNA polymerase II transcription cofactor activity |
| GO:0006357 | regulation of transcription from RNA polymerase II promoter |
| GO:0016592 | mediator complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.