PH01000061G0800's details annotation
1.Annotation
ICBR annotation: glucosidase II beta subunit-like domain containing protein, expressed
Blast result AT5G35080 : 3.50E-30
Blast annotation: -
2.Location
Scaffold: PH01000061
Strand: -
| Region | Start | End |
| gene | 548761 | 550793 |
| mRNA | 548761 | 550793 |
| exon | 548761 | 549264 |
| exon | 549342 | 549448 |
| exon | 549575 | 549641 |
| exon | 550023 | 550138 |
| exon | 550540 | 550793 |
| CDS | 549105 | 549264 |
| CDS | 549342 | 549448 |
| CDS | 549575 | 549641 |
| CDS | 550023 | 550138 |
| CDS | 550540 | 550764 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000131 | GT13 GlycosylTransferases vacuolar_proton-transporting_V-type_ATPase,_V0_domain Golgi membrane, proton-transporting V-type ATPase, V0 domain, |
| coexpression network | CFinderM000336 | C2C2-LSD Transcription_Regulator(from iTAK) LSD Transcription_Regulator(from PlantTFDB) cellulose biosynthetic process, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001085 | |
| coexpression network | CFinderM001117 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001851 | katanin_complex microtubule_severing exocyst, exocytosis, microtubule binding, triglyceride lipase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13015.5 | PRKCSH_1 | 119 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.