PH01000061G0950's details annotation
1.Annotation
ICBR annotation: transcription initiation factor TFIID subunit 1, putative, expressed
Blast result AT1G32750 : 1.00E-159
Blast annotation: HAC13 protein (HAC13)
2.Location
Scaffold: PH01000061
Strand: -
| Region | Start | End |
| gene | 646491 | 657067 |
| mRNA | 646491 | 657067 |
| exon | 646491 | 647005 |
| exon | 647162 | 647368 |
| exon | 648555 | 648891 |
| exon | 649150 | 649387 |
| exon | 649795 | 649823 |
| exon | 650647 | 651670 |
| exon | 652523 | 652574 |
| exon | 653133 | 653242 |
| exon | 653833 | 654084 |
| exon | 654264 | 654306 |
| exon | 654392 | 654454 |
| exon | 655411 | 655523 |
| exon | 656505 | 657067 |
| CDS | 646808 | 647005 |
| CDS | 647162 | 647368 |
| CDS | 648555 | 648891 |
| CDS | 649150 | 649387 |
| CDS | 649795 | 649823 |
| CDS | 650647 | 651670 |
| CDS | 652523 | 652574 |
| CDS | 653133 | 653242 |
| CDS | 653833 | 654084 |
| CDS | 654264 | 654306 |
| CDS | 654392 | 654454 |
| CDS | 655411 | 655523 |
| CDS | 656505 | 656556 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001870 | Basal_transcription_factors SNF2 Transcription_Regulator(from iTAK) transferase activity, transferring pentosyl groups, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09247.10 | TBP-binding | 22 | 65 |
| PF12157.7 | DUF3591 | 521 | 874 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIID subunit 1 | ko03022 | K03125 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.