PH01000061G1340's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000061
Strand: -
| Region | Start | End |
| gene | 918698 | 922826 |
| mRNA | 918698 | 922826 |
| exon | 918698 | 918913 |
| exon | 918989 | 919063 |
| exon | 919835 | 919894 |
| exon | 919999 | 920061 |
| exon | 920679 | 920759 |
| exon | 921430 | 921602 |
| exon | 922471 | 922826 |
| CDS | 918812 | 918913 |
| CDS | 918989 | 919063 |
| CDS | 919835 | 919894 |
| CDS | 919999 | 920061 |
| CDS | 920679 | 920759 |
| CDS | 921430 | 921602 |
| CDS | 922471 | 922660 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000997 | oligosaccharide metabolic process, GH63 Glycoside_Hydrolases cell wall, cell wall modification, mannosyl-oligosaccharide glucosidase activity, CE8 Carbohydrate_Esterases N-Glycan_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | bZIP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.