PH01000061G1490's details annotation
1.Annotation
ICBR annotation: two-component response regulator, putative, expressed
Blast result AT2G25180 : 1.50E-82
Blast annotation: response regulator 12
2.Location
Scaffold: PH01000061
Strand: +
| Region | Start | End |
| gene | 1017529 | 1021550 |
| mRNA | 1017529 | 1021550 |
| exon | 1017529 | 1017947 |
| exon | 1018080 | 1018232 |
| exon | 1018879 | 1019271 |
| exon | 1019364 | 1019440 |
| exon | 1019776 | 1020930 |
| exon | 1021278 | 1021550 |
| CDS | 1017794 | 1017947 |
| CDS | 1018080 | 1018232 |
| CDS | 1018879 | 1019271 |
| CDS | 1019364 | 1019440 |
| CDS | 1019776 | 1020930 |
| CDS | 1021278 | 1021334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000031 | |
| coexpression network | CFinderM000377 | ARR-B Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
| Transcription_Regulator(from PlantTFDB) | ARR-B |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00072.23 | Response_reg | 28 | 136 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000156 | phosphorelay response regulator activity |
| GO:0000160 | phosphorelay signal transduction system |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.