PH01000062G0590's details annotation
1.Annotation
ICBR annotation: DnaK family protein, putative, expressed
Blast result AT4G16660 : 0.00E+00
Blast annotation: heat shock protein 70 (Hsp 70) family protein
2.Location
Scaffold: PH01000062
Strand: +
| Region | Start | End |
| gene | 369877 | 376402 |
| mRNA | 369877 | 376402 |
| exon | 369877 | 370934 |
| exon | 371149 | 371381 |
| exon | 371889 | 372048 |
| exon | 372450 | 372695 |
| exon | 372786 | 372922 |
| exon | 373237 | 373570 |
| exon | 373648 | 373809 |
| exon | 374351 | 374425 |
| exon | 374517 | 374617 |
| exon | 374690 | 374759 |
| exon | 375390 | 375446 |
| exon | 375542 | 375603 |
| exon | 375692 | 375764 |
| exon | 375851 | 376402 |
| CDS | 370344 | 370934 |
| CDS | 371149 | 371381 |
| CDS | 371889 | 372048 |
| CDS | 372450 | 372695 |
| CDS | 372786 | 372922 |
| CDS | 373237 | 373570 |
| CDS | 373648 | 373809 |
| CDS | 374351 | 374425 |
| CDS | 374517 | 374617 |
| CDS | 374690 | 374759 |
| CDS | 375390 | 375446 |
| CDS | 375542 | 375603 |
| CDS | 375692 | 375764 |
| CDS | 375851 | 376072 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000008 | TKL-Pl-4 (from iTAK) RLK-Pelle_RLCK-VIIa-2 (from iTAK) transferase activity, transferring phosphorus-containing groups, protein phosphorylation, Spliceosome protein kinase activity, ATP binding, protein serine/threonine kinase activity, exocyst, chloroplast, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00012.19 | HSP70 | 2 | 678 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | hypoxia up-regulated 1 | ko04141 | K09486 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.