PH01000062G0620's details annotation
1.Annotation
ICBR annotation: uncharacterized protein At1g26090, chloroplast precursor, putative, expressed
Blast result AT1G26090 : 3.40E-65
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000062
Strand: +
| Region | Start | End |
| gene | 403542 | 410245 |
| mRNA | 403542 | 410245 |
| exon | 403542 | 403810 |
| exon | 404144 | 404287 |
| exon | 404392 | 404466 |
| exon | 404543 | 404730 |
| exon | 404813 | 404978 |
| exon | 405074 | 405475 |
| exon | 406538 | 406783 |
| exon | 406984 | 407160 |
| exon | 408005 | 408132 |
| exon | 408760 | 409203 |
| exon | 409612 | 410245 |
| CDS | 403634 | 403810 |
| CDS | 404144 | 404287 |
| CDS | 404392 | 404466 |
| CDS | 404543 | 404730 |
| CDS | 404813 | 404978 |
| CDS | 405074 | 405475 |
| CDS | 406538 | 406783 |
| CDS | 406984 | 407160 |
| CDS | 408005 | 408132 |
| CDS | 408760 | 409203 |
| CDS | 409612 | 409783 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000602 | cysteine-type endopeptidase inhibitor activity, AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02374.14 | ArsA_ATPase | 38 | 270 |
| PF00011.20 | HSP20 | 584 | 698 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.