PH01000062G1420's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat, putative, expressed
Blast result AT3G52140 : 0.00E+00
Blast annotation: tetratricopeptide repeat (TPR)-containing protein
2.Location
Scaffold: PH01000062
Strand: -
| Region | Start | End |
| gene | 964670 | 979807 |
| mRNA | 964670 | 979807 |
| exon | 964670 | 965287 |
| exon | 966133 | 966198 |
| exon | 966562 | 966669 |
| exon | 966745 | 967054 |
| exon | 967559 | 967642 |
| exon | 968028 | 968068 |
| exon | 968142 | 968198 |
| exon | 968297 | 968455 |
| exon | 968710 | 968778 |
| exon | 968856 | 969005 |
| exon | 969170 | 969301 |
| exon | 969742 | 969828 |
| exon | 969911 | 970081 |
| exon | 970155 | 970289 |
| exon | 970711 | 970800 |
| exon | 970882 | 970990 |
| exon | 972732 | 972850 |
| exon | 973638 | 973742 |
| exon | 974531 | 974912 |
| exon | 975793 | 976017 |
| exon | 976197 | 976352 |
| exon | 979585 | 979807 |
| CDS | 964826 | 965287 |
| CDS | 966133 | 966198 |
| CDS | 966562 | 966669 |
| CDS | 966745 | 967054 |
| CDS | 967559 | 967642 |
| CDS | 968028 | 968068 |
| CDS | 968142 | 968198 |
| CDS | 968297 | 968455 |
| CDS | 968710 | 968778 |
| CDS | 968856 | 969005 |
| CDS | 969170 | 969301 |
| CDS | 969742 | 969828 |
| CDS | 969911 | 970081 |
| CDS | 970155 | 970289 |
| CDS | 970711 | 970800 |
| CDS | 970882 | 970990 |
| CDS | 972732 | 972850 |
| CDS | 973638 | 973742 |
| CDS | 974531 | 974912 |
| CDS | 975793 | 976017 |
| CDS | 976197 | 976352 |
| CDS | 979585 | 979784 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001667 | spliceosomal_tri-snRNP_complex_assembly chromosome, centromeric region, U4/U6_x_U5_tri-snRNP_complex chromosome, DNA topological change, mitosis, nuclear mRNA splicing, via spliceosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13236.5 | CLU | 180 | 412 |
| PF12807.6 | eIF3_p135 | 540 | 722 |
| PF13424.5 | TPR_12 | 863 | 935 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.