Annotation of co-expression genes

PH01000064G0280's details annotation

1.Annotation

ICBR annotation: uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed

Blast result AT1G35910 : 4.00E-102
Blast annotation: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

2.Location

Scaffold: PH01000064
Strand: -

RegionStartEnd
gene165402171566
mRNA165402171566
exon165402167812
exon168192168284
exon168395168465
exon168595168664
exon169546169803
exon169901169954
exon170183170281
exon170714170785
exon170940171080
exon171191171566
CDS167756167812
CDS168192168284
CDS168395168465
CDS168595168664
CDS169546169803
CDS169901169954
CDS170183170281
CDS170714170785
CDS170940171080
CDS171191171385

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02358.15Trehalose_PPase90228
PF02358.15Trehalose_PPase248349

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismtrehalose 6-phosphate phosphatase [EC:3.1.3.12]ko00500K01087

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005992trehalose biosynthetic process
GO:0008152metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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