Annotation of co-expression genes

PH01000064G1570's details annotation

1.Annotation

ICBR annotation: MYB family transcription factor, putative, expressed

Blast result AT2G02820 : 1.60E-67
Blast annotation: myb domain protein 88

2.Location

Scaffold: PH01000064
Strand: -

RegionStartEnd
gene961490966214
mRNA961490966214
exon961490962411
exon962690963159
exon963246963427
exon963514963656
exon963749963888
exon963978964174
exon964257964436
exon964545964600
exon965140965212
exon965319965506
exon965969966214
CDS962325962411
CDS962690963159
CDS963246963427
CDS963514963656
CDS963749963888
CDS963978964174
CDS964257964436
CDS964545964600
CDS965140965212
CDS965319965506
CDS965969966061

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB
Transcription_Regulator(from PlantTFDB)MYB

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13921.5Myb_DNA-bind_628116

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003682chromatin binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.