PH01000064G2060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G39520 : 1.10E-27
Blast annotation: Protein of unknown function (DUF1997)
2.Location
Scaffold: PH01000064
Strand: +
| Region | Start | End |
| gene | 1259316 | 1262330 |
| mRNA | 1259316 | 1262330 |
| exon | 1259316 | 1261516 |
| exon | 1261620 | 1261727 |
| exon | 1261823 | 1262023 |
| exon | 1262119 | 1262330 |
| CDS | 1261313 | 1261516 |
| CDS | 1261620 | 1261727 |
| CDS | 1261823 | 1262023 |
| CDS | 1262119 | 1262256 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001153 | translation, Ribosome structural constituent of ribosome, alpha-amylase activity, intracellular, large ribosomal subunit, rRNA binding, cation binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09366.9 | DUF1997 | 1 | 121 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.