PH01000065G0880's details annotation
1.Annotation
ICBR annotation: CS domain containing protein, putative, expressed
Blast result AT5G53400 : 1.80E-76
Blast annotation: HSP20-like chaperones superfamily protein
2.Location
Scaffold: PH01000065
Strand: -
| Region | Start | End |
| gene | 549929 | 554070 |
| mRNA | 549929 | 554070 |
| exon | 549929 | 550513 |
| exon | 550837 | 550920 |
| exon | 551024 | 551190 |
| exon | 551303 | 551386 |
| exon | 551501 | 551540 |
| exon | 551655 | 551827 |
| exon | 553551 | 554070 |
| CDS | 550502 | 550513 |
| CDS | 550837 | 550920 |
| CDS | 551024 | 551190 |
| CDS | 551303 | 551386 |
| CDS | 551501 | 551540 |
| CDS | 551655 | 551827 |
| CDS | 553551 | 553959 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04969.15 | CS | 155 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.