PH01000065G1770's details annotation
1.Annotation
ICBR annotation: N-rich protein, putative, expressed
Blast result AT5G61910 : 1.10E-35
Blast annotation: DCD (Development and Cell Death) domain protein
2.Location
Scaffold: PH01000065
Strand: +
| Region | Start | End |
| gene | 1093200 | 1103584 |
| mRNA | 1093200 | 1103584 |
| exon | 1093200 | 1094356 |
| exon | 1096623 | 1096739 |
| exon | 1096860 | 1097320 |
| exon | 1098487 | 1098560 |
| exon | 1098761 | 1098767 |
| exon | 1099317 | 1099772 |
| exon | 1102046 | 1102145 |
| exon | 1103097 | 1103282 |
| exon | 1103408 | 1103584 |
| CDS | 1093511 | 1094356 |
| CDS | 1096623 | 1096739 |
| CDS | 1096860 | 1097320 |
| CDS | 1098487 | 1098560 |
| CDS | 1098761 | 1098767 |
| CDS | 1099317 | 1099772 |
| CDS | 1102046 | 1102145 |
| CDS | 1103097 | 1103282 |
| CDS | 1103408 | 1103566 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10539.8 | Dev_Cell_Death | 207 | 329 |
| PF14223.5 | Retrotran_gag_2 | 685 | 750 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.