PH01000065G2150's details annotation
1.Annotation
ICBR annotation: AAA-type ATPase family protein, putative, expressed
Blast result AT3G19740 : 1.40E-27
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000065
Strand: +
| Region | Start | End |
| gene | 1334422 | 1337188 |
| mRNA | 1334422 | 1337188 |
| exon | 1334422 | 1335950 |
| exon | 1336003 | 1336168 |
| exon | 1336259 | 1336353 |
| exon | 1336435 | 1336638 |
| exon | 1337042 | 1337188 |
| CDS | 1335903 | 1335950 |
| CDS | 1336003 | 1336168 |
| CDS | 1336259 | 1336353 |
| CDS | 1336435 | 1336638 |
| CDS | 1337042 | 1337140 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.