PH01000067G0250's details annotation
1.Annotation
ICBR annotation: glycosyl hydrolase family 10 protein, putative, expressed
Blast result AT4G38650 : 2.00E-178
Blast annotation: Glycosyl hydrolase family 10 protein
2.Location
Scaffold: PH01000067
Strand: +
| Region | Start | End |
| gene | 186201 | 193720 |
| mRNA | 186201 | 193720 |
| exon | 186201 | 186486 |
| exon | 188808 | 189000 |
| exon | 189150 | 189184 |
| exon | 189273 | 189423 |
| exon | 191267 | 191442 |
| exon | 191683 | 191784 |
| exon | 191888 | 192034 |
| exon | 192207 | 192845 |
| exon | 193187 | 193720 |
| CDS | 186412 | 186486 |
| CDS | 188808 | 189000 |
| CDS | 189150 | 189184 |
| CDS | 189273 | 189423 |
| CDS | 191267 | 191442 |
| CDS | 191683 | 191784 |
| CDS | 191888 | 192034 |
| CDS | 192207 | 192845 |
| CDS | 193187 | 193531 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000039 | bHLH Transcription_Regulator(from PlantTFDB) CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases SBP Transcription_Regulator(from PlantTFDB) protein dimerization activity, negative regulation of catalytic activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate-Binding_Modules | CBM22 |
| Glycoside_Hydrolases | GH10 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00331.19 | Glyco_hydro_10 | 272 | 536 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.