PH01000067G0360's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor subunit 1, putative, expressed
Blast result AT5G51660 : 0.00E+00
Blast annotation: cleavage and polyadenylation specificity factor 160
2.Location
Scaffold: PH01000067
Strand: -
| Region | Start | End |
| gene | 299695 | 311203 |
| mRNA | 299695 | 311203 |
| exon | 299695 | 300033 |
| exon | 300120 | 300293 |
| exon | 300393 | 300521 |
| exon | 300827 | 301057 |
| exon | 301194 | 301271 |
| exon | 301359 | 301502 |
| exon | 301542 | 301583 |
| exon | 305316 | 306088 |
| exon | 306630 | 306668 |
| exon | 306843 | 306885 |
| exon | 306986 | 307187 |
| exon | 307945 | 308039 |
| exon | 309082 | 309263 |
| exon | 309798 | 309934 |
| exon | 310409 | 311203 |
| CDS | 300004 | 300033 |
| CDS | 300120 | 300293 |
| CDS | 300393 | 300521 |
| CDS | 300827 | 301057 |
| CDS | 301194 | 301271 |
| CDS | 301359 | 301502 |
| CDS | 301542 | 301583 |
| CDS | 305316 | 306088 |
| CDS | 306630 | 306668 |
| CDS | 306843 | 306885 |
| CDS | 306986 | 307187 |
| CDS | 307945 | 308039 |
| CDS | 309082 | 309263 |
| CDS | 309798 | 309934 |
| CDS | 310409 | 310440 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001752 | spindle pole, microtubule organizing center, STE_STE11 (from iTAK) microtubule cytoskeleton organization, mRNA_surveillance_pathway |
| coexpression network | CFinderM001861 | SNARE_interactions_in_vesicular_transport acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03178.14 | CPSF_A | 642 | 766 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | cleavage and polyadenylation specificity factor subunit 1 | ko03015 | K14401 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.