PH01000068G0730's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative
Blast result AT5G48910 : 8.00E-133
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01000068
Strand: +
| Region | Start | End |
| gene | 497357 | 499658 |
| mRNA | 497357 | 499658 |
| exon | 497357 | 499658 |
| CDS | 497597 | 499330 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000693 | ornithine_metabolic_process histone deacetylation, protein import into nucleus, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, protein transporter activity, amino acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 111 | 138 |
| PF01535.19 | PPR | 140 | 163 |
| PF13041.5 | PPR_2 | 169 | 215 |
| PF13041.5 | PPR_2 | 269 | 316 |
| PF01535.19 | PPR | 344 | 368 |
| PF14432.5 | DYW_deaminase | 443 | 566 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.