PH01000068G0910's details annotation
1.Annotation
ICBR annotation: OsRCI2-10 - Hydrophobic protein LTI6A, expressed
Blast result AT3G05890 : 2.20E-20
Blast annotation: Low temperature and salt responsive protein family
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 621922 | 623194 |
| mRNA | 621922 | 623194 |
| exon | 621922 | 622268 |
| exon | 622711 | 622790 |
| exon | 622894 | 623194 |
| CDS | 622265 | 622268 |
| CDS | 622711 | 622790 |
| CDS | 622894 | 623019 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000361 | GH3 Glycoside_Hydrolases integral to membrane, lipid transport, Cyanoamino_acid_metabolism Phenylpropanoid_biosynthesis Starch_and_sucrose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01679.16 | Pmp3 | 21 | 67 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.