PH01000068G1020's details annotation
1.Annotation
ICBR annotation: pectinacetylesterase domain containing protein, expressed
Blast result AT3G05910 : 3.00E-139
Blast annotation: Pectinacetylesterase family protein
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 688328 | 693529 |
| mRNA | 688328 | 693529 |
| exon | 688328 | 689551 |
| exon | 689609 | 689683 |
| exon | 689912 | 690057 |
| exon | 690140 | 690245 |
| exon | 690343 | 690420 |
| exon | 690513 | 690566 |
| exon | 690739 | 690799 |
| exon | 690949 | 691121 |
| exon | 691159 | 691245 |
| exon | 691558 | 691631 |
| exon | 691769 | 691898 |
| exon | 692029 | 692111 |
| exon | 692907 | 693529 |
| CDS | 689507 | 689551 |
| CDS | 689609 | 689683 |
| CDS | 689912 | 690057 |
| CDS | 690140 | 690245 |
| CDS | 690343 | 690420 |
| CDS | 690513 | 690566 |
| CDS | 690739 | 690799 |
| CDS | 690949 | 691121 |
| CDS | 691159 | 691245 |
| CDS | 691558 | 691631 |
| CDS | 691769 | 691898 |
| CDS | 692029 | 692111 |
| CDS | 692907 | 693078 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000783 | carbohydrate metabolic process, CE13 Carbohydrate_Esterases hydrolase activity, hydrolyzing O-glycosyl compounds, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Carbohydrate_Esterases | CE13 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03283.12 | PAE | 41 | 391 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.