Annotation of co-expression genes

PH01000068G1210's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000068
Strand: -

RegionStartEnd
gene811073814649
mRNA811073814649
exon811073811168
exon811678811740
exon811880812039
exon812247812463
exon814335814649
CDS811112811168
CDS811678811740
CDS811880812039
CDS812247812463
CDS814335814398

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001234Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_187127

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
SpliceosomeFUS-interacting serine-arginine-rich protein 1ko03041K12900

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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