Annotation of co-expression genes

PH01000068G1270's details annotation

1.Annotation

ICBR annotation: protein kinase domain containing protein, expressed

Blast result AT1G14000 : 6.00E-178
Blast annotation: VH1-interacting kinase

2.Location

Scaffold: PH01000068
Strand: +

RegionStartEnd
gene845935851600
mRNA845935851600
exon845935846436
exon847128847202
exon847854847970
exon849170849264
exon849466849586
exon849684849763
exon850291850350
exon850427850548
exon850635850720
exon850815850985
exon851039851600
CDS846074846436
CDS847128847202
CDS847854847970
CDS849170849264
CDS849466849586
CDS849684849763
CDS850291850350
CDS850427850548
CDS850635850720
CDS850815850985
CDS851039851110

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12796.6Ank_253116
PF07714.16Pkinase_Tyr182401

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.