PH01000068G1320's details annotation
1.Annotation
ICBR annotation: exosome complex exonuclease, putative, expressed
Blast result AT4G27490 : 3.70E-89
Blast annotation: 3-5-exoribonuclease family protein
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 908211 | 912517 |
| mRNA | 908211 | 912517 |
| exon | 908211 | 908779 |
| exon | 908857 | 909006 |
| exon | 909102 | 909190 |
| exon | 909755 | 909875 |
| exon | 909977 | 910079 |
| exon | 910388 | 910466 |
| exon | 910519 | 910564 |
| exon | 911301 | 911341 |
| exon | 911838 | 912517 |
| CDS | 908690 | 908779 |
| CDS | 908857 | 909006 |
| CDS | 909102 | 909190 |
| CDS | 909755 | 909875 |
| CDS | 909977 | 910079 |
| CDS | 910388 | 910466 |
| CDS | 910519 | 910564 |
| CDS | 911301 | 911341 |
| CDS | 911838 | 911982 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01138.20 | RNase_PH | 78 | 197 |
| PF03725.14 | RNase_PH_C | 201 | 262 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | exosome complex component MTR3 | ko03018 | K12587 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.