PH01000068G1400's details annotation
1.Annotation
ICBR annotation: CSLA7 - cellulose synthase-like family A
Blast result AT5G22740 : 9.00E-139
Blast annotation: cellulose synthase-like A02
2.Location
Scaffold: PH01000068
Strand: -
| Region | Start | End |
| gene | 949874 | 956831 |
| mRNA | 949874 | 956831 |
| exon | 949874 | 950803 |
| exon | 950890 | 951084 |
| exon | 951184 | 951383 |
| exon | 951457 | 951570 |
| exon | 951653 | 951789 |
| exon | 952489 | 952741 |
| exon | 955077 | 955175 |
| exon | 955302 | 955532 |
| exon | 955565 | 955659 |
| exon | 955766 | 956831 |
| CDS | 950638 | 950803 |
| CDS | 950890 | 951084 |
| CDS | 951184 | 951383 |
| CDS | 951457 | 951570 |
| CDS | 951653 | 951789 |
| CDS | 952489 | 952741 |
| CDS | 955077 | 955175 |
| CDS | 955302 | 955532 |
| CDS | 955565 | 955659 |
| CDS | 955766 | 955874 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13641.5 | Glyco_tranf_2_3 | 133 | 258 |
| PF13632.5 | Glyco_trans_2_3 | 263 | 396 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.