PH01000068G1550's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S9-2, putative, expressed
Blast result AT5G15200 : 9.80E-89
Blast annotation: Ribosomal protein S4
2.Location
Scaffold: PH01000068
Strand: +
| Region | Start | End |
| gene | 1074041 | 1079218 |
| mRNA | 1074041 | 1079218 |
| exon | 1074041 | 1074183 |
| exon | 1074936 | 1075317 |
| exon | 1078799 | 1079218 |
| CDS | 1074156 | 1074183 |
| CDS | 1074936 | 1075317 |
| CDS | 1078799 | 1078973 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00163.18 | Ribosomal_S4 | 12 | 64 |
| PF01479.24 | S4 | 109 | 152 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S9e | ko03011 | K02997 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
| GO:0019843 | rRNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.