PH01000068G1610's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT2G02820 : 8.40E-53
Blast annotation: myb domain protein 88
2.Location
Scaffold: PH01000068
Strand: +
| Region | Start | End |
| gene | 1113754 | 1118763 |
| mRNA | 1113754 | 1118763 |
| exon | 1113754 | 1114032 |
| exon | 1114757 | 1114813 |
| exon | 1114916 | 1114965 |
| exon | 1115796 | 1115868 |
| exon | 1116275 | 1116402 |
| exon | 1116510 | 1116689 |
| exon | 1116769 | 1116965 |
| exon | 1117055 | 1117194 |
| exon | 1117288 | 1117430 |
| exon | 1117510 | 1117685 |
| exon | 1117772 | 1118241 |
| exon | 1118515 | 1118763 |
| CDS | 1113937 | 1114032 |
| CDS | 1114757 | 1114813 |
| CDS | 1114916 | 1114965 |
| CDS | 1115796 | 1115868 |
| CDS | 1116275 | 1116402 |
| CDS | 1116510 | 1116689 |
| CDS | 1116769 | 1116965 |
| CDS | 1117055 | 1117194 |
| CDS | 1117288 | 1117430 |
| CDS | 1117510 | 1117685 |
| CDS | 1117772 | 1118241 |
| CDS | 1118515 | 1118601 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.