Annotation of co-expression genes

PH01000069G0270's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT3G13000 : 3.60E-73
Blast annotation: Protein of unknown function, DUF547

2.Location

Scaffold: PH01000069
Strand: +

RegionStartEnd
gene164294173024
mRNA164294173024
exon164294165414
exon165931166036
exon166661167199
exon168412168602
exon168724168862
exon169342169428
exon169823169939
exon170254170382
exon170577171115
exon171365171464
exon171763171822
exon172078172197
exon172714173024
CDS165250165414
CDS165931166036
CDS166661167199
CDS168412168602
CDS168724168862
CDS169342169428
CDS169823169939
CDS170254170382
CDS170577171115
CDS171365171464
CDS171763171822
CDS172078172197
CDS172714172917

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14389.5Lzipper-MIP1400448
PF04784.13DUF547684764

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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