PH01000070G0050's details annotation
1.Annotation
ICBR annotation: auxin efflux carrier component, putative, expressed
Blast result AT1G20925 : 1.00E-109
Blast annotation: Auxin efflux carrier family protein
2.Location
Scaffold: PH01000070
Strand: -
| Region | Start | End |
| gene | 41718 | 45664 |
| mRNA | 41718 | 45664 |
| exon | 41718 | 42516 |
| exon | 42584 | 42817 |
| exon | 42936 | 42988 |
| exon | 43160 | 43260 |
| exon | 43372 | 43464 |
| exon | 43911 | 44032 |
| exon | 44981 | 45105 |
| exon | 45266 | 45345 |
| exon | 45492 | 45664 |
| CDS | 42392 | 42516 |
| CDS | 42584 | 42817 |
| CDS | 42936 | 42988 |
| CDS | 43160 | 43260 |
| CDS | 43372 | 43464 |
| CDS | 43911 | 44032 |
| CDS | 44981 | 45105 |
| CDS | 45266 | 45345 |
| CDS | 45492 | 45626 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000243 | Alanine,_aspartate_and_glutamate_metabolism adenylosuccinate synthase activity, purine nucleotide biosynthetic process, cytokinesis microtubule cytoskeleton organization, RNA-dependent DNA replication, Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03547.17 | Mem_trans | 11 | 155 |
| PF03547.17 | Mem_trans | 163 | 346 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.