Annotation of co-expression genes

PH01000070G0770's details annotation

1.Annotation

ICBR annotation: CHIT13 - Chitinase family protein precursor, expressed

Blast result AT1G05850 : 1.50E-37
Blast annotation: Chitinase family protein

2.Location

Scaffold: PH01000070
Strand: +

RegionStartEnd
gene444661447843
mRNA444661447843
exon444661446093
exon446236446392
exon446518447843
CDS445691446093
CDS446236446392
CDS446518446938

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000856SNARE_interactions_in_vesicular_transport
chitinase activity,
cell wall macromolecule catabolic process,
chitin catabolic process,
vesicle-mediated transport,
coexpression networkCFinderM000975GTnc GlycosylTransferases
tRNA (guanine-N1-)-methyltransferase activity,
tRNA methylation,
chitin catabolic process,
cell wall macromolecule catabolic process,
chaperone binding,
chitinase activity,
transferase activity,
coexpression networkCFinderM001339chitin catabolic process,
chitinase activity,
cell wall macromolecule catabolic process,
GH19 Glycoside_Hydrolases

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00182.18Glyco_hydro_1973145

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004568chitinase activity
GO:0006032chitin catabolic process
GO:0016998cell wall macromolecule catabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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