PH01000070G1370's details annotation
1.Annotation
ICBR annotation: pob, putative, expressed
Blast result AT4G12590 : 1.00E-61
Blast annotation: Protein of unknown function DUF106, transmembrane
2.Location
Scaffold: PH01000070
Strand: +
| Region | Start | End |
| gene | 832451 | 837771 |
| mRNA | 832451 | 837771 |
| exon | 832451 | 834282 |
| exon | 834502 | 834595 |
| exon | 834844 | 834963 |
| exon | 835054 | 835102 |
| exon | 835641 | 835902 |
| exon | 836004 | 836065 |
| exon | 836175 | 836236 |
| exon | 836769 | 837771 |
| CDS | 834122 | 834282 |
| CDS | 834502 | 834595 |
| CDS | 834844 | 834963 |
| CDS | 835054 | 835102 |
| CDS | 835641 | 835902 |
| CDS | 836004 | 836065 |
| CDS | 836175 | 836236 |
| CDS | 836769 | 837104 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001789 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, C3H Transcription_Regulator(from PlantTFDB) ATP hydrolysis coupled proton transport, DNA repair, nuclease activity, endonuclease activity, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001799 | Various_types_of_N-glycan_biosynthesis Base_excision_repair N-Glycan_biosynthesis nuclease activity, endonuclease activity, NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01956.15 | DUF106 | 4 | 143 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.