PH01000071G0710's details annotation
1.Annotation
ICBR annotation: DUF647 domain containing protein, putative, expressed
Blast result AT5G49820 : 5.00E-130
Blast annotation: Protein of unknown function, DUF647
2.Location
Scaffold: PH01000071
Strand: +
| Region | Start | End |
| gene | 511834 | 517338 |
| mRNA | 511834 | 517338 |
| exon | 511834 | 512535 |
| exon | 513363 | 513461 |
| exon | 513539 | 513652 |
| exon | 514102 | 514173 |
| exon | 514276 | 514386 |
| exon | 514501 | 514620 |
| exon | 515093 | 515165 |
| exon | 515282 | 515428 |
| exon | 516136 | 516216 |
| exon | 516301 | 516365 |
| exon | 516458 | 516559 |
| exon | 516638 | 516817 |
| exon | 516948 | 517338 |
| CDS | 512218 | 512535 |
| CDS | 513363 | 513461 |
| CDS | 513539 | 513652 |
| CDS | 514102 | 514173 |
| CDS | 514276 | 514386 |
| CDS | 514501 | 514620 |
| CDS | 515093 | 515165 |
| CDS | 515282 | 515428 |
| CDS | 516136 | 516216 |
| CDS | 516301 | 516365 |
| CDS | 516458 | 516559 |
| CDS | 516638 | 516817 |
| CDS | 516948 | 517016 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04884.13 | DUF647 | 106 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.