PH01000072G0330's details annotation
1.Annotation
ICBR annotation: ctr copper transporter family protein, putative, expressed
Blast result AT2G26975 : 2.20E-28
Blast annotation: Ctr copper transporter family
2.Location
Scaffold: PH01000072
Strand: +
| Region | Start | End |
| gene | 255349 | 256307 |
| mRNA | 255349 | 256307 |
| exon | 255349 | 256307 |
| CDS | 255417 | 255887 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000669 | RLK-Pelle_LRR-Xa (from iTAK) copper_ion_transmembrane_transport HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) copper ion transmembrane transporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04145.14 | Ctr | 29 | 70 |
| PF04145.14 | Ctr | 89 | 131 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005375 | copper ion transmembrane transporter activity |
| GO:0016021 | integral to membrane |
| GO:0035434 | copper ion transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.