Annotation of co-expression genes

PH01000072G0370's details annotation

1.Annotation

ICBR annotation: mitochondrial glycoprotein, putative, expressed

Blast result AT4G32605 : 9.00E-48
Blast annotation: Mitochondrial glycoprotein family protein

2.Location

Scaffold: PH01000072
Strand: -

RegionStartEnd
gene290173293370
mRNA290173293370
exon290173290597
exon290897290971
exon291510291568
exon292383293370
CDS290428290597
CDS290897290971
CDS291510291568
CDS292383292930

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02330.15MAM33227277

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005759mitochondrial matrix

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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