PH01000072G1540's details annotation
1.Annotation
ICBR annotation: eukaryotic aspartyl protease domain containing protein, expressed
Blast result AT5G22850 : 4.00E-148
Blast annotation: Eukaryotic aspartyl protease family protein
2.Location
Scaffold: PH01000072
Strand: +
| Region | Start | End |
| gene | 1142567 | 1150230 |
| mRNA | 1142567 | 1150230 |
| exon | 1142567 | 1143115 |
| exon | 1144469 | 1144598 |
| exon | 1144741 | 1144994 |
| exon | 1145750 | 1145977 |
| exon | 1146400 | 1146562 |
| exon | 1146651 | 1146724 |
| exon | 1146820 | 1146916 |
| exon | 1147040 | 1147106 |
| exon | 1149745 | 1149816 |
| exon | 1149905 | 1150230 |
| CDS | 1142856 | 1143115 |
| CDS | 1144469 | 1144598 |
| CDS | 1144741 | 1144994 |
| CDS | 1145750 | 1145977 |
| CDS | 1146400 | 1146562 |
| CDS | 1146651 | 1146724 |
| CDS | 1146820 | 1146916 |
| CDS | 1147040 | 1147106 |
| CDS | 1149745 | 1149816 |
| CDS | 1149905 | 1150083 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14543.5 | TAXi_N | 89 | 275 |
| PF14541.5 | TAXi_C | 294 | 445 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.