Annotation of co-expression genes

PH01000073G0080's details annotation

1.Annotation

ICBR annotation: SUMO-activating enzyme subunit 2, putative, expressed

Blast result AT2G21470 : 0.00E+00
Blast annotation: SUMO-activating enzyme 2

2.Location

Scaffold: PH01000073
Strand: +

RegionStartEnd
gene3740645941
mRNA3740645941
exon3740639040
exon3917939268
exon4016040243
exon4039740615
exon4174541846
exon4293043376
exon4345743686
exon4393744030
exon4411644298
exon4442444545
exon4509845941
CDS3900839040
CDS3917939268
CDS4016040243
CDS4039740615
CDS4174541846
CDS4293043376
CDS4345743686
CDS4393744030
CDS4411644298
CDS4442444545
CDS4509845410

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00899.20ThiF5403
PF10585.8UBA_e1_thiolCys269365
PF14732.5UAE_UbL438538

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ubiquitin mediated proteolysisubiquitin-like 1-activating enzyme E1 B [EC:6.3.2.1]ko04120K10685

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005524ATP binding
GO:0006464cellular protein modification process
GO:0008641small protein activating enzyme activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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